peptdeep.mass_spec.mass_calibration

Classes:

MassCalibratorForRT_KNN([n_neighbors])

Using KNN to calibrate measured m/z across RT.

Functions:

calibrate_one(start_end_shift, frag_df)

get_fragment_median(start_end_idxes, frag_df)

class peptdeep.mass_spec.mass_calibration.MassCalibratorForRT_KNN(n_neighbors=5)[source][source]

Bases: object

Using KNN to calibrate measured m/z across RT.

Methods:

__init__([n_neighbors])

calibrate(psm_df, mass_error_df)

fit(psm_df, mass_error_df)

__init__(n_neighbors=5)[source][source]
calibrate(psm_df: DataFrame, mass_error_df: DataFrame) → DataFrame[source][source]
fit(psm_df: DataFrame, mass_error_df: DataFrame)[source][source]
peptdeep.mass_spec.mass_calibration.calibrate_one(start_end_shift, frag_df)[source][source]
peptdeep.mass_spec.mass_calibration.get_fragment_median(start_end_idxes: tuple, frag_df: DataFrame)[source][source]