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peptdeep 1.5.1-dev0 documentation
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peptdeep 1.5.1-dev0 documentation
  • Tutorials and Notebooks
    • Using peptdeep for MHC class I immunopeptidomics
    • Tutorial: building new models from scratch
    • Tutorial: Predicting Spectral Library from Fasta
    • Translate spectral libraries
    • Tutorial: using ModelManager
    • Building your own models for RT prediction
    • Building your own models for CCS prediction
  • peptdeep.protein
    • peptdeep.protein.fasta
  • peptdeep.pipeline_api
  • peptdeep.pretrained_models
  • peptdeep.model
    • peptdeep.model.generic_property_prediction
    • peptdeep.model.model_interface
    • peptdeep.model.building_block
    • peptdeep.model.featurize
    • peptdeep.model.ms2
    • peptdeep.model.rt
    • peptdeep.model.ccs
  • peptdeep.settings
  • peptdeep.rescore
    • peptdeep.rescore.fdr
    • peptdeep.rescore.feature_extractor
    • peptdeep.rescore.percolator
  • peptdeep.spec_lib
    • peptdeep.spec_lib.predict_lib
    • peptdeep.spec_lib.library_factory
    • peptdeep.spec_lib.translate
  • alphabase.mass_spec
    • peptdeep.mass_spec.mass_calibration
    • peptdeep.mass_spec.match
    • peptdeep.mass_spec.ms_reader
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alphabase.mass_specΒΆ

Legacy modules and functionalities. Should be replaced by functionalities in the AlphaRaw project.

  • peptdeep.mass_spec.mass_calibration
  • peptdeep.mass_spec.match
  • peptdeep.mass_spec.ms_reader
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